Journal Title
Title of Journal: J Mol Model
|
Abbravation: Journal of Molecular Modeling
|
Publisher
Springer Berlin Heidelberg
|
|
|
|
Authors: Samiyara Begum Ranga Subramanian
Publish Date: 2015/12/09
Volume: 22, Issue: 1, Pages: 6-
Abstract
The structural features spectroscopic properties and interaction energies of the linear protonbound complexes of OCH+ and its sulfur analog SCH+ with N2 were investigated using the highlevel ab initio methods MP2 and CCSDT as well as density functional theory with the augccpVXZ X = D T basis sets The rotational constants along with the vibrational frequencies of the cation–molecule complexes are reported here A comparison of the interaction energies of the OCH+–N2 and SCH+–N2 complexes with those of the OCH+–CO and OCH+–OC complexes was also performed The energies of all the complexes were determined at the complete basis set CBS limit CS shows higher proton affinity at the C site than CO does so the complex OCH+–N2 is relatively strongly bound and has a higher interaction energy than the SCH+–N2 complex Symmetryadapted perturbation theory SAPT was used to decompose the total interaction energies of the complexes into the attractive electrostatic interaction energy E elst induction energy E ind dispersion energy E disp and repulsive exchange energy E exch We found that the ratio of E ind to E disp is large for these linear protonbound complexes meaning that inductive effects are favored in these complexes The bonding characteristics of the linear complexes were elucidated using natural bond orbital NBO theory NBO analysis showed that the attractive interaction is caused by NBO charge transfer from the lone pair on N to the σC–H antibonding orbital in XCH+–N2 X = O S The quantum theory of atoms in molecules QTAIM was used to analyze the strengths of the various bonds within and between the cation and molecule in each of these protonbound complexes in terms of the electron density at bond critical points BCP
Keywords:
.
|
Other Papers In This Journal:
- The X∙∙∙Au interactions in the CF 3 X (X = Cl, Br) ∙∙∙Au n ( n = 2, 3, and 4) complexes
- Structures and energies of the radicals and anions generated from chlorpyrifos
- Quantitative structure-activity relationship by CoMFA for cyclic urea and nonpeptide-cyclic cyanoguanidine derivatives on wild type and mutant HIV-1 protease
- The charge mobilities in fused ring Oligothiophenes and their derivatives: influence of molecular structures
- Computational design of a lipase for catalysis of the Diels-Alder reaction
- Evolutionary trace analysis of ionotropic glutamate receptor sequences and modeling the interactions of agonists with different NMDA receptor subunits
- Computational quest for spherical C 12 B 68 fullerenes with “ magic ” π-electrons and quasi-planar tetra-coordinated carbon
- The interaction strengths and spectroscopy parameters of the C 2 H 2 ∙∙∙HX and HCN∙∙∙HX complexes (X = F, Cl, CN, and CCH) and related ternary systems valued by fluxes of charge densities: QTAIM, CCFO, and NBO calculations
- Structure and properties of alizarin complex formed with alkali metal hydroxides in methanol solution
- Relationships between aqueous acidities and computed surface-electrostatic potentials and local ionization energies of substituted phenols and benzoic acids
- The simulation of UV spectroscopy and electronic analysis of temozolomide and dacarbazine chemical decomposition to their metabolites
- Homology modeling, substrate docking, and molecular simulation studies of mycobacteriophage Che12 lysin A
- Cellular interaction through LewisX cluster: theoretical studies
- DFT tests for group 8 transition metal carbonyl complexes
- Combinatorially-generated library of 6-fluoroquinolone analogs as potential novel antitubercular agents: a chemometric and molecular modeling assessment
- Electronic, magnetic and optical properties of Cu, Ag, Au-doped Si clusters
- Structural and functional characterization of AtPTR3, a stress-induced peptide transporter of Arabidopsis
- Optical chemosensors for Cu(II) ion based on BODIPY derivatives: an experimental and theoretical study
- The interaction of CCl 4 with Ng (Ng = He, Ne, Ar), O 2 , D 2 O and ND 3 : rovibrational energies, spectroscopic constants and theoretical calculations
- Novel insights into the structural requirements for the design of selective and specific aldose reductase inhibitors
- Atomistic simulations of materials for optical chemical sensors: DFT-D calculations of molecular interactions between gas-phase analyte molecules and simple substrate models
- Computational study of graphene growth on copper by first-principles and kinetic Monte Carlo calculations
- Evaluation of active designs of cephalosporin C acylase by molecular dynamics simulation and molecular docking
- Comparison of the structural characteristics of Cu 2+ -bound and unbound α-syn12 peptide obtained in simulations using different force fields
- Improving the hydrogen storage properties of metal-organic framework by functionalization
- Mixtures of amino-acid based ionic liquids and water
- SWIFT MODELLER : A JAVA based GUI for molecular modeling
- Theoretical studies of the interaction between enflurane and water
- CNXeCl and CNXeBr species as halogen bond donors: a quantum chemical study on the structure, properties, and nature of halogen···nitrogen interactions
- Insights from comprehensive multiple receptor docking to HDAC8
- Molecular docking and molecular dynamics studies reveal structural basis of inhibition and selectivity of inhibitors EGCG and OSU-03012 toward glucose regulated protein-78 (GRP78) overexpressed in glioblastoma
- Computational investigation of stoichiometric effects, binding site heterogeneities, and selectivities of molecularly imprinted polymers
- Mechanism of OH-initiated atmospheric oxidation of E/Z-CF 3 CF = CFCF 3 : a quantum mechanical study
- Periodic density functional theory study of the high-pressure behavior of crystalline l -serine- l -ascorbic acid
- A model for the shuttle motions of puerarin and daidzin inside the cavity of β-cyclodextrin in aqueous acetic acid: insights from molecular dynamics simulations
- Mechanistic aspects of superacid mediated condensation of polyphenols with ketones. Implications for polymer synthesis
- Symmetric nested complexes of fullerenes
- A density functional study towards substituent effects on anion sensing with urea receptors
- An Insilico approach to High Altitude Pulmonary Edema - Molecular modeling of human β 2 adrenergic receptor and its interaction with Salmeterol & Nifedipine
- A comparative study of semi-squaraine and squaraine dyes using computational techniques: tuning the charge transfer/biradicaloid character by substitution
- The reaction mechanisms and kinetics of CF 3 CHFOCH 3 and CHF 2 CHFOCF 3 with atomic chlorine: a computational study
- Theoretical study of CO oxidation on cationic, neutral, and anionic AuM dimers (M = Pd and Ag)
- In silico investigations of possible routes of assembly of ORF 3a from SARS-CoV
- Some molecular/crystalline factors that affect the sensitivities of energetic materials: molecular surface electrostatic potentials, lattice free space and maximum heat of detonation per unit volume
- Substitution, cooperative, and solvent effects on π pnicogen bonds in the FH 2 P and FH 2 As complexes
- Molecular crystals: the crystal field effect on molecular electronic structure
- Binuclear rhenium carbonyl nitrosyls related to dicobalt octacarbonyl and their decarbonylation products
- Evolution of the hydrogen-bonding motif in the melamine–cyanuric acid co-crystal: a topological study
- Structure-based characterization of the binding of peptide to the human endophilin-1 Src homology 3 domain using position-dependent noncovalent potential analysis
- Modeling of adsorption in nanopores
- A density functional theory study of hydrocarbon combustion and synthesis on Ni surfaces
- Catalytic mechanisms of Au 11 and Au 11-n Pt n ( n =1–2) clusters: a DFT investigation on the oxidation of CO by O 2
- Molecular modeling studies of poly lactic acid initiation mechanisms
- Dynamics of DNA polymerase I (Klenow fragment) under external force
- Comparative molecular field analysis and molecular dynamics studies of α/β hydrolase domain containing 6 (ABHD6) inhibitors
- Dyotropic rearrangement of bridgehead substituents in closed dithienylethenes; conjugated verses non-conjugated analogues
- A rational reduction of CI expansions: combining localized molecular orbitals and selected charge excitations
- A DFT investigation of conformational geometries and interconversion equilibria of phenylthiosemicarbazone and its complexation with zinc
- Molecular modeling of the GABA C receptor ligand-binding domain
- Photophysical properties of copper(I) complexes containing pyrazine-fused phenanthroline ligands: a joint experimental and theoretical investigation
- A QM-MD simulation approach to the analysis of FRET processes in (bio)molecular systems. A case study: complexes of E. coli purine nucleoside phosphorylase and its mutants with formycin A
- New pockets in dengue virus 2 surface identified by molecular dynamics simulation
- Study on the anisotropic response of condensed-phase RDX under repeated stress wave loading via ReaxFF molecular dynamics simulation
- Mechanism of extractive/oxidative desulfurization using the ionic liquid inimidazole acetate: a computational study
- Regression formulae for ab initio and density functional calculated chemical shifts
- Structural insights into human GPCR protein OA1: a computational perspective
- Performance of four different force fields for simulations of dipeptide conformations: GlyGly, GlyGly − , GlyGly · Cl − , GlyGly · Na + and GlyGly · (H 2 O) 2
- Electronic, ductile, phase transition and mechanical properties of Lu-monopnictides under high pressures
|