Journal Title
Title of Journal: Funct Integr Genomics
|
Abbravation: Functional & Integrative Genomics
|
Publisher
Springer-Verlag
|
|
|
|
|
|
Authors: Nils Rostoks YongJin Park Wusirika Ramakrishna Jianxin Ma Arnis Druka Bryan A Shiloff Phillip J SanMiguel Zeyu Jiang Robert Brueggeman Devinder Sandhu Kulvinder Gill Jeffrey L Bennetzen Andris Kleinhofs
Publish Date: 2002/04/25
Volume: 2, Issue: 1-2, Pages: 51-59
Abstract
Barley Hordeum vulgare L is one of the most important largegenome cereals with extensive genetic resources available in the public sector Studies of genome organization in barley have been limited primarily to genetic markers and sparse sequence data Here we report sequence analysis of 4175 kb DNA from four BAC clones from different genomic locations Sequences were analyzed with respect to gene content the arrangement of repetitive sequences and the relationship of gene density to recombination frequencies Gene densities ranged from 1 gene per 12 kb to 1 gene per 103 kb with an average of 1 gene per 21 kb In general genes were organized into islands separated by large blocks of nested retrotransposons Single genes in apparent isolation were also found Genes occupied 11 of the total sequence LTR retrotransposons and other repeated elements accounted for 519 and the remaining 371 could not be annotated
Keywords:
.
|
Other Papers In This Journal:
- Control of flowering time and spike development in cereals: the earliness per se Eps-1 region in wheat, rice, and Brachypodium
- The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis
- miRNA-based drought regulation in wheat
- Comparative genomics and functional analysis of the NiaP family uncover nicotinate transporters from bacteria, plants, and mammals
- Integrated protein network and microarray analysis to identify potential biomarkers after myocardial infarction
- Comparative analysis of expressed sequence tags from different organs of Vitis vinifera L.
- Genome-wide analysis of intronless genes in rice and Arabidopsis
- Single-copy genes define a conserved order between rice and wheat for understanding differences caused by duplication, deletion, and transposition of genes
- Identification of candidate genes JcARF19 and JcIAA9 associated with seed size traits in Jatropha
- Genome-wide expression profiling in Geobacter sulfurreducens : identification of Fur and RpoS transcription regulatory sites in a rel Gsu mutant
- Empirical Bayes estimation of gene-specific effects in micro-array research
- Phytoremediation and phytosensing of chemical contaminants, RDX and TNT: identification of the required target genes
- Os11Gsk gene from a wild rice, Oryza rufipogon improves yield in rice
|