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Title of Journal: Ecosystems

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Abbravation: Ecosystems

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Springer US

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DOI

10.1016/0013-4694(67)90042-9

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1435-0629

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Spatially Explicit Modeling in Ecology A Review

Authors: Donald L DeAngelis Simeon Yurek
Publish Date: 2016/11/17
Volume: 20, Issue: 2, Pages: 284-300
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Abstract

The use of spatially explicit models SEMs in ecology has grown enormously in the past two decades One major advancement has been that finescale details of landscapes and of spatially dependent biological processes such as dispersal and invasion can now be simulated with great precision due to improvements in computer technology Many areas of modeling have shifted toward a focus on capturing these finescale details to improve mechanistic understanding of ecosystems However spatially implicit models SIMs have played a dominant role in ecology and arguments have been made that SIMs which account for the effects of space without specifying spatial positions have an advantage of being simpler and more broadly applicable perhaps contributing more to understanding We address this debate by comparing SEMs and SIMs in examples from the past few decades of modeling research We argue that although SIMs have been the dominant approach in the incorporation of space in theoretical ecology SEMs have unique advantages for addressing pragmatic questions concerning species populations or communities in specific places because local conditions such as spatial heterogeneities organism behaviors and other contingencies produce dynamics and patterns that usually cannot be incorporated into simpler SIMs SEMs are also able to describe mechanisms at the local scale that can create amplifying positive feedbacks at that scale creating emergent patterns at larger scales and therefore are important to basic ecological theory We review the use of SEMs at the level of populations interacting populations food webs and ecosystems and argue that SEMs are not only essential in pragmatic issues but must play a role in the understanding of causal relationships on landscapesDon DeAngelis conceived and designed the study The research involved reviewing papers and work on the topic of the review This was divided evenly between the two authors Don DeAngelis and Simeon Yurek Don DeAngelis wrote most sections of the paper Simeon Yurek wrote some sections and reviewed and edited the whole paperThe Authors appreciate the helpful comments of two anonymous reviewers DLD and SY were supported in part by the USGS Greater Everglades Priority Ecosystems Science program and SY was supported in part by the University of Miami McLamore Fellowship in Tropical Biology


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Other Papers In This Journal:

  1. Spatially Explicit Modeling in Ecology: A Review
  2. Urban bird conservation: presenting stakeholder-specific arguments for the development of bird-friendly cities
  3. Natural 15 N Abundance of Plants and Soil N in a Temperate Coniferous Forest
  4. Social Perceptions of Rainforest and Climatic Change from Rural Communities in Southern Mexico
  5. Land cover in single-family housing areas and how it correlates with urban form
  6. Chemical Changes During 6 Years of Decomposition of 11 Litters in Some Canadian Forest Sites. Part 2. 13 C Abundance, Solid-State 13 C NMR Spectroscopy and the Meaning of “Lignin”
  7. A comparison of the growth and cooling effectiveness of five commonly planted urban tree species
  8. Tree Harvest in an Experimental Sand Ecosystem: Plant Effects on Nutrient Dynamics and Solute Generation
  9. Using macroinvertebrate assemblages and multiple stressors to infer urban stream system condition: a case study in the central US
  10. Numerical Exploration of the Planktonic to Benthic Primary Production Ratios in Lakes of the Baltic Sea Catchment
  11. Decomposition of labile and recalcitrant litter types under different plant communities in urban soils
  12. Factors explaining the occurrence of the Siberian flying squirrel in urban forest landscape
  13. Amending soil with used cooking oil to reduce nitrogen losses after cole crop harvest: a 15 N study
  14. Effects of fertiliser type and the presence or absence of plants on nitrous oxide emissions from irrigated soils
  15. Relative contribution of trees and crops to soil carbon content in a parkland system in Burkina Faso using variations in natural 13 C abundance
  16. Shrubs affect soil nutrients availability with contrasting consequences for pasture understory and tree overstory production and nutrient status in Mediterranean grazed open woodlands
  17. Difficulties with estimating city-wide urban forest cover change from national, remotely-sensed tree canopy maps
  18. Forecasting long-term global fertilizer demand
  19. 15 N tracer technique analysis of the absorption and utilisation of nitrogen fertiliser by potatoes
  20. Response of Net Ecosystem Productivity of Three Boreal Forest Stands to Drought
  21. Nitrogen, phosphorus, and potassium budgets in Indian agriculture
  22. Basin-Scale Consequences of Agricultural Land Use on Benthic Light Availability and Primary Production Along a Sixth-Order Temperate River
  23. Linking Forest Fire Regimes and Climate—A Historical Analysis in a Dry Inner Alpine Valley
  24. Effects of different manuring systems with and without biogas digestion on nitrogen cycle and crop yield in mixed organic dairy farming systems
  25. Chronic Atmospheric NO 3 − Deposition Does Not Induce NO 3 − Use by Acer saccharum Marsh.
  26. Crop response of aerobic rice and winter wheat to nitrogen, phosphorus and potassium in a double cropping system
  27. Watershed Effects on Chemical Properties of Sediment and Primary Consumption in Estuarine Tidal Flats: Importance of Watershed Size and Food Selectivity by Macrobenthos
  28. Pine Forest Floor Carbon Accumulation in Response to N and PK Additions: Bomb 14 C Modelling and Respiration Studies
  29. Net N immobilisation during the biodegradation of mucilage in soil as affected by repeated mineral and organic fertilisation
  30. Residence Times and Decay Rates of Downed Woody Debris Biomass/Carbon in Eastern US Forests
  31. Phosphorus and potassium cycling in a long-term no-till integrated soybean-beef cattle production system under different grazing intensities insubtropics
  32. Citizen Science as an Approach for Overcoming Insufficient Monitoring and Inadequate Stakeholder Buy-in in Adaptive Management: Criteria and Evidence
  33. Subsidies of Aquatic Resources in Terrestrial Ecosystems
  34. Contribution of relay intercropping with legume cover crops on nitrogen dynamics in organic grain systems
  35. Exotic Earthworm Invasion and Microbial Biomass in Temperate Forest Soils
  36. Tree Species Effect on Litter Decomposition and Nutrient Release in Mediterranean Oak Forests Changes Over Time
  37. Long-Term Experiments Reveal Strong Interactions Between Lemmings and Plants in the Fennoscandian Highland Tundra
  38. Comparative Biogeochemical Cycles of Bioenergy Crops Reveal Nitrogen-Fixation and Low Greenhouse Gas Emissions in a Miscanthus ×  giganteus Agro-Ecosystem
  39. Method and timing of grassland renovation affects herbage yield, nitrate leaching, and nitrous oxide emission in intensively managed grasslands
  40. A 2200-Year Record of Permafrost Dynamics and Carbon Cycling in a Collapse-Scar Bog, Interior Alaska
  41. Mineralizable soil nitrogen and labile soil organic matter in diverse long-term cropping systems
  42. Vegetation Leachate During Arctic Thaw Enhances Soil Microbial Phosphorus
  43. Accumulation of phosphorus fractions in typic Hapludalf soil after long-term application of pig slurry and deep pig litter in a no-tillage system
  44. Soil N 2 O fluxes in integrated production systems, continuous pasture and Cerrado
  45. Spatial–Temporal Dynamics in Barrier Island Upland Vegetation: The Overlooked Coastal Landscape
  46. Estimated Ultraviolet Radiation Doses in Wetlands in Six National Parks
  47. Comparative short-term effects of different quality organic resources on maize productivity under two different environments in Zimbabwe
  48. Gross nitrogen mineralization in pulse-crop rotations on the Northern Great Plains
  49. Tree cavity availability across forest, park, and residential habitats in a highly urban area
  50. Management strategies for reducing soil degradation through modeling in a GIS environment in northern Ethiopia catchment
  51. Millet nutrient use efficiency as affected by natural soil fertility, mineral fertilizer use and rainfall in the West African Sahel
  52. The effect of earthworms on roadway-derived Zn deposited as a surface layer in storm water retention basin soils
  53. Ecological Effects of Live Salmon Exceed Those of Carcasses During an Annual Spawning Migration
  54. Calcium Additions and Microbial Nitrogen Cycle Processes in a Northern Hardwood Forest
  55. Common Factors Drive Disease and Coarse Woody Debris Dynamics in Forests Impacted by Sudden Oak Death
  56. On the Importance of Shrub Encroachment by Sprouters, Climate, Species Richness and Anthropic Factors for Ecosystem Multifunctionality in Semi-arid Mediterranean Ecosystems
  57. Nitrogen fertilization and critical nitrogen concentration for contemporary high yielding cotton under no-tillage
  58. Tree-Level Patterns of Lodgepole Pine Growth and Leaf Area in Yellowstone National Park: Explaining Anomalous Patterns of Growth Dominance Within Stands
  59. Effects of catch crops on silage maize ( Zea mays L.): yield, nitrogen uptake efficiency and losses
  60. Nitrogen input, 15 N balance and mineral N dynamics in a rice–wheat rotation in southwest China
  61. Scaling of Pelagic Metabolism to Size, Trophy and Forest Cover in Small Danish Lakes
  62. Rain Forest Islands in the Chilean Semiarid Region: Fog-dependency, Ecosystem Persistence and Tree Regeneration
  63. Nutrient cycling in an agroforestry alley cropping system receiving poultry litter or nitrogen fertilizer
  64. Deep Autotrophic Soil Respiration in Shrubland and Woodland Ecosystems in Central New Mexico
  65. How much nitrogen is fixed by biological symbiosis in tropical dry forests? 2. Herbs
  66. Nitrogen fertilizer placement and timing affects bread wheat ( Triticum aestivum) quality and yield in an irrigated bed planting system
  67. Nitrogen fixation of red clover interseeded with winter cereals across a management-induced fertility gradient
  68. Response of bulk chemical composition, lignin and carbohydrate signature to grassland conversion in a ley-arable cropping system
  69. Nitrogen recovery and downslope translocation in maize hillside cropping as affected by soil conservation
  70. Effect of seasonal rainfall, N fertilizer and tillage on N utilization by dryland wheat in a semi-arid environment
  71. Environmental and Vegetation Drivers of Seasonal CO 2 Fluxes in a Sub-arctic Forest–Mire Ecotone
  72. Red Coral Fishery at the Costa Brava (NW Mediterranean): Case Study of an Overharvested Precious Coral
  73. Long-term effects of fertilization and manuring on groundnut yield and nutrient balance of Alfisols under rainfed farming in India
  74. Response of intensively grazed ryegrass dairy pastures to fertiliser phosphorus and potassium
  75. Effect of seasonal rainfall, N fertilizer and tillage on N utilization by dryland wheat in a semi-arid environment
  76. Above- and belowground litter stocks and decay at a multi-species afforestation site on arid, saline soil
  77. Topography, Fuels, and Fire Exclusion Drive Fire Severity of the Rim Fire in an Old-Growth Mixed-Conifer Forest, Yosemite National Park, USA
  78. Productivity of yam-based systems with herbaceous legumes and short fallows in the Guinea-Sudan transition zone of Benin

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