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Title of Journal: J Membrane Biol

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Abbravation: The Journal of Membrane Biology

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Springer US

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DOI

10.1002/prs.10506

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1432-1424

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Molecular Dynamic Simulation of Transmembrane Pore

Authors: M Deminsky A Eletskii A Kniznik A Odinokov V Pentkovskii B Potapkin
Publish Date: 2013/05/10
Volume: 246, Issue: 11, Pages: 821-831
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Abstract

A molecular dynamic approach was applied for simulation of dynamics of pore formation and growth in a phospholipid bilayer in the presence of an external electric field Processing the simulation results permitted recovery of the kinetic coefficients used in the Einstein–Smoluchowski equation describing the dynamics of pore evolution Two different models of the bilayer membrane were considered membrane consisting of POPC and POPE lipids The simulations permitted us to find nonempirical values of the pore energy parameters which are compared with empirical values It was found that the parameters are sensitive to membrane type

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  1. The Chemical Nature of the Polar Functional Group of Oxidized Acyl Chain Uniquely Modifies the Physicochemical Properties of Oxidized Phospholipid-Containing Lipid Particles
  2. Gating-Related Molecular Motions in the Extracellular Domain of the I Ks Channel: Implications for I Ks Channelopathy
  3. Effects of Phospholipase A 2 Inhibitors on Bilayer Lipid Membranes
  4. The Effect of Millisecond Pulsed Electric Fields (msPEF) on Intracellular Drug Transport with Negatively Charged Large Nanocarriers Made of Solid Lipid Nanoparticles (SLN): In Vitro Study
  5. Evolution of the Oligopeptide Transporter Family
  6. Slow Gating of Gap Junction Channels and Calmodulin
  7. Genistein Modifies the Activation Kinetics and Magnitude of Phosphorylated Wild-Type and G551D-CFTR Chloride Currents
  8. A Multi-label Classifier for Prediction Membrane Protein Functional Types in Animal
  9. Extracellular Adenine Nucleotides Regulate Na+/H+ Exchanger NHE3 Activity in A6-NHE3 Transfectants by a cAMP/PKA-dependent Mechanism
  10. Biological Properties of Melanoma and Endothelial Cells after Plasmid AMEP Gene Electrotransfer Depend on Integrin Quantity on Cells
  11. Part-2: Analytical Expressions of Concentrations of Glucose, Oxygen, and Gluconic Acid in a Composite Membrane for Closed-Loop Insulin Delivery for the Non-steady State Conditions
  12. Prediction of Protein–Protein Interaction Sites with Machine-Learning-Based Data-Cleaning and Post-Filtering Procedures
  13. Salinity-Induced Noise in Membrane Potential of Characeae Chara australis : Effect of Exogenous Melatonin
  14. Swelling-Induced Ca 2+ Influx and K + Efflux in American Alligator Erythrocytes
  15. Tubular Fluid Secretion in the Seminiferous Epithelium: Ion Transporters and Aquaporins in Sertoli Cells
  16. Ionic Currents of Human Trabecular Meshwork Cells from Control and Glaucoma Subjects
  17. Inactivation of Pseudomonas putida by Pulsed Electric Field Treatment: A Study on the Correlation of Treatment Parameters and Inactivation Efficiency in the Short-Pulse Range
  18. Effect of Chloride Channel Inhibitors on Cytosolic Ca 2+ Levels and Ca 2+ -Activated K + (Gardos) Channel Activity in Human Red Blood Cells
  19. Carbon Nanotube-Encapsulated Drug Penetration Through the Cell Membrane: An Investigation Based on Steered Molecular Dynamics Simulation
  20. Influence of Pathogenic Mutations on the Energetics of Translocon-Mediated Bilayer Integration of Transmembrane Helices
  21. Inhibition of Glial Na + and K + Currents by Tamoxifen
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