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Title of Journal: Virus Genes

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Abbravation: Virus Genes

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Springer US

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DOI

10.1007/s11262-008-0246-9

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1572-994X

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Molecular characterization and phylogenetic analys

Authors: Hongyan Xia Lihong Liu AnnaMalin Linde Sándor Belák Heléne Norder Frederik Widén
Publish Date: 2008/08/01
Volume: 37, Issue: 1, Pages: 39-48
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Abstract

Hepatitis E virus HEV has been detected in humans and in a broad range of animals including pigs For the first time the fulllength genomic sequence of a HEV of European porcine origin termed swX07E1 was determined Comparative analysis of 76 complete or nearly complete nucleotide sequences showed that swX07E1 shares the highest nucleotide identity with Japanese swine HEV swJ85 and swJ124 The wholegenome phylogenetic analysis showed that swX07E1 from Europe belongs to genotype3 HEV clusters with variants from Japan Mongolia and Kyrgyzstan in subgroup 3c but it is divergent from the prototype US HEV Our analysis indicates that swX07E1 represents a new subgroup of genotype3 and that analysis of fulllength sequences is necessary to discover new subgroups of HEV According to our knowledge swX07E1 is the first fulllength genome sequence of HEV from European swine Knowledge about the full length HEV sequence from European swine is very important for understanding the HEV evolutionary events and the molecular mechanism of infection in human and in animalsThis work was supported by the European Union project “Pathogen Combat” contract number FOODCT2005007081 and European Union Network of Excellence “Network for the prevention and control of Zoonoses MedVetNet” contract number 506122 Support was also received from the “Ivar och Elsa Sandberg’s foundation” Sweden

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  2. ORF43 of maize rayado fino virus is dispensable for systemic infection of maize and transmission by leafhoppers
  3. Sequence and phylogenetic analysis identifies a putative novel gyrovirus 3 genotype in ferret feces
  4. Combination of intratypic and intertypic recombinant events in EV71: a novel evidence for the “triple-recombinant” strains of genotype A viruses in Mainland China from 2008 to 2010
  5. Expression patterns of prion protein gene in differential genotypes sheep: quantification using molecular beacon real-time RT-PCR
  6. Phylogenetic analysis of the VP1 gene of Enterovirus 71 in Guangzhou during the high occurrence period of 2008
  7. A novel finding for enterovirus virulence from the capsid protein VP1 of EV71 circulating in mainland China
  8. Epidemiological investigation of Middle East respiratory syndrome coronavirus in dromedary camel farms linked with human infection in Abu Dhabi Emirate, United Arab Emirates
  9. Comparative genomic sequence analysis of novel Helicoverpa armigera nucleopolyhedrovirus (NPV) isolated from Kenya and three other previously sequenced Helicoverpa spp. NPVs
  10. Genetic comparisons between lentogenic Newcastle disease virus isolated from waterfowl and velogenic variants
  11. Pathogenicity and insect transmission of a begomovirus complex between tomato yellow leaf curl virus and Ageratum yellow vein betasatellite
  12. Determination of the full length sequence of a chicken astrovirus suggests a different replication mechanism
  13. Identification of a new newcastle disease virus isolate from Indonesia represents an ancestral lineage of class II genotype XIII
  14. Sequencing of the Tamus red mosaic virus genome: further evidence that it is a distinct species of the genus Potexvirus
  15. Evolution and adaptation of hemagglutinin gene of human H5N1 influenza virus
  16. Full-length hepatitis B virus sequences from naïve patients with fluctuation of viral load during ADV monotherapy
  17. Vaccine derived bi- and multi-recombinant Sabin strains
  18. Genomic deletions and mutations resulting in the loss of eight genes reduce the in vivo replication capacity of Meleagrid herpesvirus 1
  19. Complete nucleotide sequence of a monopartite Begomovirus and associated satellites infecting Carica papaya in Nepal
  20. Complete nucleotide sequence of a monopartite Begomovirus and associated satellites infecting Carica papaya in Nepal
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  23. Mutations of two transmembrane cysteines of hemagglutinin (HA) from influenza A H3N2 virus affect HA thermal stability and fusion activity
  24. Genotyping of human bocavirus using a restriction length polymorphism
  25. Identification and RNA segment assignment of six structural proteins of Scylla serrata reovirus
  26. Instability in vitro of a PCV2 infectious clone containing an insertion between ORF1 and ORF2
  27. Genetic characterization of Amazonian bovine papillomavirus reveals the existence of four new putative types
  28. Isolation of Virus from a SARS Patient and Genome-wide Analysis of Genetic Mutations Related to Pathogenesis and Epidemiology from 47 SARS-CoV Isolates
  29. HN gene C-terminal extension of Newcastle disease virus is not the determinant of the enteric tropism
  30. Resistance gene analogs involved in tolerant cassava–geminivirus interaction that shows a recovery phenotype
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