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Title of Journal: J Chem Crystallogr

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Abbravation: Journal of Chemical Crystallography

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Springer US

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DOI

10.1007/bf00672046

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1572-8854

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The Role of Halogen Bonding in Crystal Structures

Authors: Anna K Przybył Maciej Kubicki
Publish Date: 2012/03/03
Volume: 42, Issue: 7, Pages: 685-690
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Abstract

The crystal structures of three 3halogeno derivatives of 13Nsubstituted cytisine have been determined by Xray diffraction The two 13acetyl substituted compounds 3bromo 1 and 3iodo 2 are isostructural with the isostructurality index as high as 99 They both crystallize in monoclinic P21 space group with unit cell parameters of a = 8470910 Å b = 9226612 Å c = 8605110 Å β = 9852811º 1 and a = 823226 Å b = 917247 Å c = 854946 Å β = 981817º 2 In turn 3bromo13tbutylcarbonate derivative 3 crystallizes in orthorhombic P212121 space group with a = 681713 Å b = 789944 Å c = 31465715 Å Conformation of the cytisine skeleton is similar in all three molecules with almost planar A ring sofa conformation of Bring and C ring being an almost ideal chair However the orientations of the double C=O bonds in 13Nsubstituents are completely different in 1 and 2 it is cis with respect to C12 C12N13C14O15 torsion angle is 334º in 1 and 136º in 2 while in 3 it is trans −17543º In the structures of 1 and 2 the driving force of the crystal architecture are quite strong C–H···X halogen bonds with C···X distances far shorter than the sums of van der Waals radii C···Br in 1 is 2943019 Å and C···I in 2 29743 In contrast in 3–partially as the consequence of different orientation of the substituent—there are no halogen bondings but instead some weak C–H···O contacts organize the molecules into twodimensional patternsFor many years cytisine has been used for smoking cessation in central and eastern European countries 2 3 It is a partial agonist at the α4β2 nAChR Cytisine also shows high affinity for other nAChR subtypes but the therapeutic consequence of them is unknown These receptors have been identified as promising targets for the treatment of several neurological disorders such as Parkinson’s and Alzheimer’s diseases Tourette’s syndrome dyskinesias schizophrenia anxiety attention deficit disorder and pain 4 5 6 Additionally this natural compound was found to decrease nicotineinduced extra cellular dopamine release in the nucleus accumbens 7 and was shown to reduce ethanol drinking behaviors in mice or rats 8 9 and ethanolinduced dopamine and its metabolite 10 Therefore nicotinic ligands could be developed as potential therapeutic candidates for bingelike ethanol drinking and dependence in humansRecent interest in the chemistry of cytisine 1 has been growing because of a lack of understanding as to the molecular basis of this underpinning partial agonist profile In terms of analogues manipulation of cytisine itself is readily achievable at C3 and C5 C10 and N12 11 12 13 14 15 16 17 18 19 20 but interest in cytisine as a target for total synthesis has also been significant as well as the synthesis of cytisine derivatives 21 22


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  1. Unusual Very Strong O–H···O Hydrogen Bonding in Zinc Complex: Crystal Structure and Photoluminescence of [Zn(HL)(bpy) 2 (H 2 O)] 2 (L) (L = O 2 C(CF 2 ) 6 CO 2 , bpy = 2,2′bipyridine)
  2. Structures of Protonated Bis(pyridine-2-yl) Ketone Arylhydrazone Derivatives: [(C 5 H 4 N)(C 5 H 4 NH)C=NNHC 6 H 4 Y] + [X] − (Y,X = 3-O 2 N,Cl: 4-Me,Cl:)
  3. Hydrogen Bonded 3D Supramolecular Architectures of Three Saccharinate Salts
  4. Crystal structure of potassium tris[3-(2-pyridyl)pyrazolyl]hydroborate
  5. X-ray Structure Investigation of 20- O -β- d -glucopyranosyl-20( S )-protopanaxadiol
  6. Synthesis, X-ray Structure and Photo Chemistry of 2-(Methyl(1-Phenylvinyl)Carbamoyl)Phenyl Acetate
  7. Crystal and Molecular Structures of Di-1-Adamantylthiophosphinic Chloride, P , P -Diphenyl- N -Benzyl Phosphinothioic- and Selenoic- Amides
  8. Crystal structures of 2-pyrazinecarboxylato silver(I) and ammine 2,3-pyrazinecarboxylato disilver(I)
  9. Syntheses, Characterizations and Crystal Structures of Two Copper Coordination Polymers Both Having Cu 2 Cl 2 Bridging Subunit [Cu I (bipy) 1/2 Cl] n (1) and {[(Cu II ) 4 (phen) 4 (SSA) 2 Cl 2 ](H 2 O) 2 (DMF) 2 } n (2)
  10. Crystal Structure, Absolute Configuration, Conformational Analysis and Molecular Dynamics Study of the Novel Steroidal Tetrazole Derivative: (25 R )-3,12a-diaza-A,C-bishomo-5α-spirostano[3,4- d ] [12a,12 d ] bistetrazole [HS-989]
  11. Intermolecular Interactions in Dihydrothymine Derivatives Form Two-Dimensional and Three-Dimensional Networks
  12. Crystallographic and luminescence studies of ammonium and water adducts of anthraquinone fluorophores
  13. The Crystal Structure and Cytotoxicity of Centrosymmetric Copper(II) Complex Derived from S-methyldithiocarbazate with Isatin
  14. Dielectric Phase Transition Behavior in an N-salicyliden Based Ion Crystal
  15. Poly (Isonicotinic Acid N-Oxide–Isonicotinate-N-Oxide-Chloro-Uranyl): The Interpenetrating Grids Created by Coordination and Hydrogen Bonds
  16. Crystal Structure of a Mixed-Ligand Cu(II) Complex Forming Supramolecular Assembly via an Extensive H-Bonding and Ring–Ring π–π Interactions
  17. Crystal Structures of 2-Phenyl-2 H -1,2,3-Triazol-4-Carbaldehyde, an Active α-Glycosidase Inhibition Agent, and (1-Phenyl-1 H -1,2,3-Triazol-4-yl)Methyl Benzoate and (2-(4-Fluorophenyl)-2 H -1,2,3-Triazole-4-yl)Methanol, Two Moderately Active Compounds
  18. Structure of 4-amino-3-butyl-1,2,4-triazole-5-thione: Relation to derivatives with H, Me, Et, and Pr in the 3-position
  19. Hydrogen Bonding Ring Patterns of Chiral Dibenzoyltartrate in a Series of Hydrated Ammonium Carboxylate Salts with Chiral 1-Phenylethylammonium
  20. Crystal Structures of Trinuclear Chlorido( N,N ′-diethylthiourea)copper(I) and a Second Polymorph of Iodidotris( N,N ′-diethylthiourea)copper(I)
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  23. Synthesis, Characterization and Crystal Structure of N,N ′-di[( E )-1-(2-hydoxyphenyl)methylidene]-2,6-naphthalenedicarbohydrazide
  24. The Crystal Structure of 3-Epismilagenin Acetate and 23-Oxo-3-epismilagenin Acetate
  25. A New Coordination Polymer of Zn(II)-btc (H 3 btc = Benzene-1,3,5-tricarboxylic acid) with Protonated Acridine: Synthesis, Crystal Structure and Spectroscopic Properties
  26. Experimental Electron Density of Ammonium Dihydrogen Phosphate in the Paraelectric as well as Antiferroelectric Phases by the Maximum Entropy Method
  27. Synthesis, Structural Characterization and Spectroscopic Properties of 1,2-Bis[4-(3,5-dimethyl-1 H -pyrazol-1-yl)-2-oxobutyl]benzene
  28. Crystal Structure of 9α,11-Epoxy-7α-(methoxycarbonyl)-3-oxo-17α-pregn-4-ene-21,17-carbolactone
  29. Synthesis, Crystal Structures, Density Functional Theory (DFT) Calculations and Molecular Orbital Calculations of Three New Derivatives of 1 - (phenylsulfonyl)indole
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