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Title of Journal: Computing

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Abbravation: Computing

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Springer Vienna

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10.1002/cber.19620951206

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1436-5057

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MPI + MPI a new hybrid approach to parallel progr

Authors: Torsten Hoefler James Dinan Darius Buntinas Pavan Balaji Brian Barrett Ron Brightwell William Gropp Vivek Kale Rajeev Thakur
Publish Date: 2013/05/19
Volume: 95, Issue: 12, Pages: 1121-1136
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Abstract

Hybrid parallel programming with the message passing interface MPI for internode communication in conjunction with a sharedmemory programming model to manage intranode parallelism has become a dominant approach to scalable parallel programming While this model provides a great deal of flexibility and performance potential it saddles programmers with the complexity of utilizing two parallel programming systems in the same application We introduce an MPIintegrated sharedmemory programming model that is incorporated into MPI through a small extension to the onesided communication interface We discuss the integration of this interface with the MPI 30 onesided semantics and describe solutions for providing portable and efficient data sharing atomic operations and memory consistency We describe an implementation of the new interface in the MPICH2 and Open MPI implementations and demonstrate an average performance improvement of 40  to the communication component of a fivepoint stencil solverWe thank the members of the MPI Forum and the MPI community for their efforts in creating the MPI 30 specification In addition we thank Jeff RḢammond for reviewing a draft of this article This work was supported by the US Department of Energy Office of Science Advanced Scientific Computing Research under Contract DEAC0206CH11357 under award number DEFC0210ER26011 with program manager Sonia Sachs under award number DEFG0208ER25835 and as part of the Extremescale Algorithms and Software Institute EASI by the Department of Energy Office of Science US DOE award DESC0004131 Sandia is a multiprogram laboratory operated by Sandia Corporation a Lockheed Martin Company for the United States Department of Energys National Nuclear Security Administration under contract DEAC94AL85000

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  385. A novel segmentation algorithm for nucleus in white blood cells based on low-rank representation
  386. A novel segmentation algorithm for nucleus in white blood cells based on low-rank representation
  387. Towards flexible compensation for business transactions in Web service environment
  388. Editorial of special section on advanced in high performance, algorithm, and framework for future computing
  389. Multi-objective particle swarm-differential evolution algorithm
  390. Distributed discovery of frequent subgraphs of a network using MapReduce
  391. Effective identification and localization of immature precursors in bone marrow biopsy
  392. Vectorization path planning for autonomous mobile agent in unknown environment
  393. Hierarchical multichannel-based integrated smart metering infrastructure
  394. Interactive Restless Multi-armed Bandit Game and Swarm Intelligence Effect
  395. A Posteriori Estimates for a Natural Neumann–Neumann Domain Decomposition Algorithm on a Unilateral Contact Problem
  396. Interactive Visualization of News Distribution in Blog Space
  397. Functional queries in Datalog
  398. Two Triangulation Methods Based on Edge Refinement
  399. A learning automata-based heuristic algorithm for solving the minimum spanning tree problem in stochastic graphs
  400. Parallel morphological/neural processing of hyperspectral images using heterogeneous and homogeneous platforms
  401. Morphogenesis through moving membranes
  402. State estimation in MIMO nonlinear systems subject to unknown deadzones using recurrent neural networks
  403. Improving the multiobjective evolutionary algorithm based on decomposition with new penalty schemes
  404. Propagation and bifurcation of cracks based on implicit surfaces and discontinuous velocities
  405. Distributed identification of the lineality space of a cone
  406. XenLoop: a transparent high performance inter-VM network loopback
  407. The dynamics of the best individuals in co-evolution
  408. Multiscale modelling of the circulatory system: a preliminary analysis
  409. A new layered sensor for simultaneous measurement of EMG, MMG and oxygen consumption at the same position
  410. Complement to a comparative analysis of heuristics for the  p -median problem
  411. DisCoP: A P2P Framework for Managing and Searching Computing Markets
  412. A spectral element method with adaptive segmentation for accurately simulating extracellular electrical stimulation of neurons
  413. An ODE-based nonmonotone method for unconstrained optimization problems
  414. Secure friend discovery based on encounter history in mobile social networks
  415. Modeling and Adaptive Sliding Mode Control of the Catastrophic Course of a High-speed Underwater Vehicle
  416. Hemodynamic impact of abdominal aortic aneurysm stent-graft implantation-induced stenosis
  417. Agents based multi-criteria decision-aid
  418. Evaluation codes at singular points of algebraic differential equations
  419. Likelihood-free parallel tempering
  420. An improved back propagation algorithm topredict episodes of poor air quality
  421. An ODE-based nonmonotone method for unconstrained optimization problems
  422. Secure friend discovery based on encounter history in mobile social networks
  423. Doppler Shift Mitigation in a VANET using an IDDM approach
  424. On studying business models in mobile social networks based on two-sided market (TSM)
  425. Reconfiguration process and routing management for service platforms
  426. Sensitivity studies of pediatric material properties on juvenile lumbar spine responses using finite element analysis
  427. Understanding movement for interaction design: frameworks and approaches
  428. DGM (1, 1) model optimized by MVO (multi-verse optimizer) for annual peak load forecasting
  429. On the existence of solutions for fractional differential inclusions with anti-periodic boundary conditions
  430. Scheduling array redistribution with virtual channel support
  431. A new approach to ranking attributes in attribute based access control using decision fusion
  432. Evaluation of transcutaneous and end-tidal carbon dioxide levels during inhalation sedation in volunteers
  433. Effects of a Sigh on the Respiratory Mechanical Properties in Ali Patients
  434. Intelligent diagnosis method for a centrifugal pump using features of vibration signals
  435. Automatic messaging for improving patients engagement in diabetes management: an exploratory study
  436. Positive solutions to a two-point higher order boundary value problem
  437. Almost periodic models in impulsive ecological systems with variable diffusion
  438. Observation of ventilation effects of I-gel™, Supreme™ and Ambu AuraOnce™ with respiratory dynamics monitoring in small children
  439. A case study of Grid Computing and computer algebra: parallel Gröbner Bases and Characteristic Sets
  440. A rhythm-based access control system for secure wellness services
  441. A novel Adaptive Cluster Transformation (ACT)-based intrusion tolerant architecture for hybrid information technology
  442. Bioelectrical impedance spectroscopy to estimate fluid balance in critically ill patients
  443. Topology driven modeling: the IS metaphor
  444. MobiPass: a passport for mobile business
  445. Panconnectivity of Cartesian product graphs
  446. A conserving discretization for a Stefan problem with an interface reaction at the free boundary
  447. Consideration of mobile DNA: new forms of artificial genetic regulatory networks
  448. Effects of head size and morphology on dynamic responses to impact loading
  449. Sharing Resources at Nonuniform Access Rates
  450. A projection-based TODIM method under multi-valued neutrosophic environments and its application in personnel selection
  451. Efficient search algorithms for RNAi target detection
  452. Solving 1D Conservation Laws Using Pontryagin’s Minimum Principle
  453. Weighted Picture Automata and Weighted Logics
  454. An algorithmic analysis of DNA structure
  455. Performing DNA computation with RecA-mediated triple-stranded DNA structure
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