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Title of Journal: Conservation Genet Resour

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Abbravation: Conservation Genetics Resources

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Springer Netherlands

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DOI

10.1016/0968-0004(94)90024-8

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1877-7260

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How to use SNPs and other diagnostic diallelic gen

Authors: Steven T Kalinowski
Publish Date: 2009/11/27
Volume: 2, Issue: 1, Pages: 63-66
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Abstract

Hybridization with nonnative species is a threat to many taxa but hybrids can be difficult to identify based on morphology Genetic data is useful for estimating the ancestry of admixed populations and diallelic markers such as single nucleotide polymorphisms are popular for such applications When taxa are evolutionarily well diverged loci frequently become fixed for different alleles in each taxa and the degree of genetic admixture between two taxa can be estimated by counting diagnostic alleles for each taxa However when there is hybridization between more than two taxa and loci have only two alleles the origin of each allele cannot be assigned ambiguously to a taxon In this note I show how the expectation–maximization algorithm can be used to solve this problem A computer program for implementing this approach is available at wwwmontanaedu/kalinowski

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Other Papers In This Journal:
  1. Development of 44 gene-based SNP markers in Zhikong scallop, Chlamys farreri
  2. Polymorphic microsatellite loci in the Chinese skink, Plestiodon chinensis (squamata: scincidae)
  3. Development and application of a molecular sexing protocol in the climate change-sensitive American pika
  4. Development and characterization of 18 microsatellite loci for the spotted salamander ( Ambystoma maculatum ) using paired-end Illumina shotgun sequencing
  5. Development of microsatellite markers for Adenophora palustris (Campanulaceae), a critically endangered wetland plant species in Japan
  6. Isolation and characterization of 16 microsatellite markers in Intsia palembanica , a high-value tropical hardwood species
  7. Development of 16 microsatellite loci for the endangered sandhill dunnart ( Sminthopsis psammophila )
  8. Fecal samples fail in PCR-based diagnosis of malaria parasite infection in birds
  9. Isolation and characterization of 12 microsatellite loci from the endemic Schizothorax chongi (Fang, 1936)
  10. The development of 24 polymorphic microsatellite loci for the endangered barred galaxias, Galaxias fuscus , through next generation DNA sequencing
  11. Isolation and characterization of novel microsatellite markers in Gekko gecko (Reptilia: Gekkonidae)
  12. Twenty-nine microsatellite markers for two Australian freshwater turtles, Elseya albagula and Emydura macquarii krefftii : development from 454-sequence data and utility in related taxa
  13. Isolation and characterization of microsatellite markers for Cichla monoculus (Agassiz, 1831), an important freshwater fish in the Amazon
  14. Isolation and characterization of twelve novel polymorphic microsatellite loci in the Branchiostoma belcheri Gray (Amphioxus)
  15. Development of microsatellite markers for the spiny-bellied frog Quasipaa boulengeri (Anura: Dicroglossidae) through transcriptome sequencing
  16. Development of nine polymorphic microsatellite loci in the squirrel glider ( Petaurus norfolcensis )
  17. Evaluation of microsatellites for common ungulates in the South African wildlife industry
  18. Nine microsatellite loci for the Malagasy Poison Frogs ( Mantella )
  19. Characterization of the complete chloroplast genome of Elaeagnus mollis , a rare and endangered oil plant
  20. A rapid method for species identification and interspecies introgression based on a PCR–RFLP: application to the closely related Neotropical toads Rhinella marina and R. schneideri (Anura: Bufonidae)
  21. Development of 13 polymorphic microsatellite loci for the Greenland Halibut ( Reinhardtius hippoglossoides )
  22. Environmental DNA detection of redfin perch, Perca fluviatilis
  23. Development of diploid microsatellite markers for the North American paddlefish ( Polyodon spathula )
  24. Characterization of 9 polymorphic microsatellite loci in Lamellibrachia sp. 2, a tubeworm found at deep-sea hydrothermal vents and cold seeps
  25. Development and characterization of twelve polymorphic microsatellite loci for the Chinese concave-eared frog (Odorrana tormota)
  26. Characterization of ten novel microsatellite markers in Awaous guamensis with comments on cross amplification in congeners and other amphidromous fish native to Hawai’i
  27. Development and characterization of new microsatellite markers for Amur sturgeon ( Acipenser schrenckii)
  28. A species-specific microsatellite marker to discriminate blue catfish, channel catfish and F1 hybrids
  29. Eighteen microsatellite loci for the crown-of-thorns starfish, Acanthaster planci
  30. Development and characterization of polymorphic microsatellite marker for East Asian species of the genus Plestiodon
  31. Thirty-two polymorphic microsatellite loci of the mysid crustacean Mesopodopsis tenuipes
  32. Isolation and characterization of 14 microsatellite markers for Rhizophora mucronata (Rhizophoraceae) and their potential use in range-wide population studies
  33. Twenty-nine polymorphic microsatellite loci in Cyclura carinata , the Turks and Caicos Iguana, a critically endangered island endemic
  34. Development of polymorphic microsatellite markers in topmouth culter ( Culter alburnus )
  35. Review of the Dra I COI - COII test for the conservation of the black honeybee ( Apis mellifera mellifera )
  36. Isolation and characterization of 21 polymorphic microsatellite loci in the Japanese dace ( Tribolodon hakonensis )
  37. Isolation, characterization and PCR multiplexing of polymorphic microsatellite markers in the threatened murine rodent, Leopoldamys neilli
  38. Isolation of polymorphic microsatellite markers from amphioxus ( Branchiostoma belcheri ) and a test of cross-species amplification
  39. Molecular tools reveal diets of insectivorous birds from predator fecal matter
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