Journal Title
Title of Journal: Conservation Genet Resour
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Abbravation: Conservation Genetics Resources
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Publisher
Springer Netherlands
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Authors: Yoshimi Shinmura Alison K S Wee Koji Takayama Sankararamasubramanian Halasya Meenakshisundaram Takeshi Asakawa Onrizal Bayu Adjie Erwin Riyanto Ardli Sarawood Sungkaew Norhaslinda Binti Malekal Nguyen Xuan Tung Severino G Salmo III Orlex Baylen Yllano M Nazre Saleh Khin Khin Soe Emiko Oguri Noriaki Murakami Yasuyuki Watano Shigeyuki Baba Edward L Webb Tadashi Kajita
Publish Date: 2012/06/07
Volume: 4, Issue: 4, Pages: 951-954
Abstract
A set of 14 new microsatellite markers was developed for mangrove species Rhizophora mucronata Rhizophoraceae by using pyrosequencing Fiftysix samples from 9 populations of R mucronata in the IndoWest Pacific region were genotyped all loci were polymorphic with the number of alleles ranging from 2 to 9 The mean expected heterozygosity per locus was 016 in a population from Sabah no significant linkage disequilibrium was found among loci and significant deviation from Hardy–Weinberg equilibrium was found in 3 loci The polymorphic microsatellite markers with samples covering most of the species’ distribution range can be applied in genetic diversity studies covering a broad geographical range of the speciesThe authors thank Drs Sanjay Deshmukh Mumbai Romanus Prabowo Java Jurgenne Primavera Panay Monica Suleiman Sabah Mrs Katy Beaver PCA Seychelles and Department of Environment and Natural Resources Region VI Panay for field works to collect materials We also thank Mr Junya Ono Mr Tsuyoshi Takano and Mr Futa Yamaji for their help in DNA extraction This work was supported by the Singapore Ministry of Education grant number R154000440112 by the JSPS KAKENHI 22405005 to TK and JSPS JENESYS Programme 2009 and 2011 to the Graduate School of Science Chiba University
Keywords:
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Other Papers In This Journal:
- Development of 44 gene-based SNP markers in Zhikong scallop, Chlamys farreri
- Polymorphic microsatellite loci in the Chinese skink, Plestiodon chinensis (squamata: scincidae)
- Development and application of a molecular sexing protocol in the climate change-sensitive American pika
- Development and characterization of 18 microsatellite loci for the spotted salamander ( Ambystoma maculatum ) using paired-end Illumina shotgun sequencing
- Development of microsatellite markers for Adenophora palustris (Campanulaceae), a critically endangered wetland plant species in Japan
- Isolation and characterization of 16 microsatellite markers in Intsia palembanica , a high-value tropical hardwood species
- Development of 16 microsatellite loci for the endangered sandhill dunnart ( Sminthopsis psammophila )
- Fecal samples fail in PCR-based diagnosis of malaria parasite infection in birds
- Isolation and characterization of 12 microsatellite loci from the endemic Schizothorax chongi (Fang, 1936)
- The development of 24 polymorphic microsatellite loci for the endangered barred galaxias, Galaxias fuscus , through next generation DNA sequencing
- Isolation and characterization of novel microsatellite markers in Gekko gecko (Reptilia: Gekkonidae)
- Twenty-nine microsatellite markers for two Australian freshwater turtles, Elseya albagula and Emydura macquarii krefftii : development from 454-sequence data and utility in related taxa
- Isolation and characterization of microsatellite markers for Cichla monoculus (Agassiz, 1831), an important freshwater fish in the Amazon
- Isolation and characterization of twelve novel polymorphic microsatellite loci in the Branchiostoma belcheri Gray (Amphioxus)
- Development of microsatellite markers for the spiny-bellied frog Quasipaa boulengeri (Anura: Dicroglossidae) through transcriptome sequencing
- Development of nine polymorphic microsatellite loci in the squirrel glider ( Petaurus norfolcensis )
- Evaluation of microsatellites for common ungulates in the South African wildlife industry
- Nine microsatellite loci for the Malagasy Poison Frogs ( Mantella )
- Characterization of the complete chloroplast genome of Elaeagnus mollis , a rare and endangered oil plant
- How to use SNPs and other diagnostic diallelic genetic markers to identify the species composition of multi-species hybrids
- A rapid method for species identification and interspecies introgression based on a PCR–RFLP: application to the closely related Neotropical toads Rhinella marina and R. schneideri (Anura: Bufonidae)
- Development of 13 polymorphic microsatellite loci for the Greenland Halibut ( Reinhardtius hippoglossoides )
- Environmental DNA detection of redfin perch, Perca fluviatilis
- Development of diploid microsatellite markers for the North American paddlefish ( Polyodon spathula )
- Characterization of 9 polymorphic microsatellite loci in Lamellibrachia sp. 2, a tubeworm found at deep-sea hydrothermal vents and cold seeps
- Development and characterization of twelve polymorphic microsatellite loci for the Chinese concave-eared frog (Odorrana tormota)
- Characterization of ten novel microsatellite markers in Awaous guamensis with comments on cross amplification in congeners and other amphidromous fish native to Hawai’i
- Development and characterization of new microsatellite markers for Amur sturgeon ( Acipenser schrenckii)
- A species-specific microsatellite marker to discriminate blue catfish, channel catfish and F1 hybrids
- Eighteen microsatellite loci for the crown-of-thorns starfish, Acanthaster planci
- Development and characterization of polymorphic microsatellite marker for East Asian species of the genus Plestiodon
- Thirty-two polymorphic microsatellite loci of the mysid crustacean Mesopodopsis tenuipes
- Twenty-nine polymorphic microsatellite loci in Cyclura carinata , the Turks and Caicos Iguana, a critically endangered island endemic
- Development of polymorphic microsatellite markers in topmouth culter ( Culter alburnus )
- Review of the Dra I COI - COII test for the conservation of the black honeybee ( Apis mellifera mellifera )
- Isolation and characterization of 21 polymorphic microsatellite loci in the Japanese dace ( Tribolodon hakonensis )
- Isolation, characterization and PCR multiplexing of polymorphic microsatellite markers in the threatened murine rodent, Leopoldamys neilli
- Isolation of polymorphic microsatellite markers from amphioxus ( Branchiostoma belcheri ) and a test of cross-species amplification
- Molecular tools reveal diets of insectivorous birds from predator fecal matter
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